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Module: Seq noahprogs/Seq.py
Imported modules   
from Dictionaries import translationWithoutAmbiguity, translationWithAmbiguity
import os
import string
import sys
import traceback
import types
Functions   
describe
testCode
translate
  describe 
describe ()

Seq.py

The Sequence object. Contains a nucleotide sequence plus information such as name, a header string, accession number.

  testCode 
testCode ()

  translate 
translate (
        seq,
        table='ambi',
        start=0,
        v=debugLevel,
        )

seq sequence object or a string; return type is determined by type passed table {'ambi'|'unambi'} these are standard eukaryotic translation tables with or without ambiguity start zero-based index of start position.

[v] verbosity

Classes   

Seq

The Sequence class


Table of Contents

This document was automatically generated on Thu Feb 27 16:52:00 2003 by HappyDoc version 2.1