assemble_by_name ( fastaDict1,  fastaDict2 )

Concatenate all pairs of sequences with the same name; return a list of seqs

main ()

%(filename)s

Concatenates sequences contained in fasta files according to a list file. Sequences may be provided in one or more fasta files.

{{lis list file containing sequence names to be concatenated. Names are not case sensitive. Lines beginning with a pound symbol are ignored. A string appearing after a colon is the name of the concatenated sequence. In the absence of a specified name, the new name is a concatenation of the names of the sequences.}} For example, s1 s2 : a s3 s4 ... concatenates s1 and s2 and names the result a, s3 and s4 --> s3s4, etc {{byname concatenates sequences in two fasta files by name in the order supplied on the command line.}} {{degap remove gap characters}} {{out name of outfile. Prints to stdout by default.}} {{h Prints documentation.}} {{v verbosity 1}} {{version print version info and exit}}

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