codonalign (
        dnaSeq,
        pepSeq,
        pepLen,
        v=0,
        )

Align an ungaped nucleotide sequence based on an aligned peptide sequence; Returns a new sequence object with gaps corresponding to peptide sequence.

main ()

%(filename)s

Aligns nucleotide sequences based on an aligned peptide sequence. Neither alignment need be sorted or in any particular order.

{{nuc unaligned nucleotide sequence in fasta format}} {{pep aligned peptide sequence in fasta format}}

{{out name of outfile. Writes to stdout if unspecified.}} {{v verbosity 1}} {{h Prints documentation.}}

{{version print version info and exit}}

%(version)s