main ()
%(filename)s
Converts fasta format sequence alignments to an interleaved format
more suitable for viewing. Can also display differences from the
consensus. Blocksize and line length can be specified.
Use the command
$ fastaview [alignment1] [alignment2] ... [alignmentn] | less
to view the sequence one page at a time.
{{w Line width
60}}
{{blo Number of characters in each block; for example, set -blo=3 to view codon structure. -blo=0 turns blocks off.
10}}
{{nonum Suppress numbering of positions}}
{{dif display positions in each sequence identical to the consensus as a (.) by default or the specified character
.}}
{{con calculate consensus and display at the end of the alignment}}
{{conseq specify a sequence from the alignment by name to be used as the consensus.}}
{{plu pluarality for calculating consensus
2}}
{{hea Include header lines}}
{{out name of output file. Writes to screen by defult.}}
{{h Print documentation}}
{{version print version info and exit}}
%(version)s
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